Interval joins
Interval joins
| Property Name | Default | Meaning |
|---|---|---|
| spark.biodatageeks.rangejoin.useJoinOrder | false | Whether to always broadcast the right table of a join or to computer row counts and pick up the smaller one. |
| spark.biodatageeks.rangejoin.maxBroadcastSize | 0.1*spark.driver.memory | The maximum allowed size of the broadcasted intverval structure which is used by the SeQuiLa’s optimizer to chose interval join algorithm. |
| spark.biodatageeks.rangejoin.maxGap | 0 | The maximum gap between between regions |
| spark.biodatageeks.rangejoin.minOverlap | 1 | The minimal length of the overlap between regions |
| spark.biodatageeks.rangejoin.intervalHolderClass | IntervalTreeRedBlack |
Pluggable mechanism for implementing custom interval structures. |
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Last modified February 1, 2023: fix:race condition for local[n] in toCoverage method (#172) (a49c32b)