Configuration

Glossary of SeQuiLa’s parameters and configuration options

How to set parameters

SET spark.biodatageeks.readAligment.method=disq;
from pysequila import SequilaSession
ss = SequilaSession \
.builder \
.getOrCreate()
ss.sql("SET spark.biodatageeks.readAligment.method=disq")

General

General parameters

Pileup and coverage

Pileup and coverage

Interval joins

Interval joins