General
General parameters
| Property Name | Default | Meaning |
|---|---|---|
| spark.biodatageeks.readAligment.method | hadoopBAM | Whether to use hadoopBAM or disq. Hadoop-BAM seems to be more performant in local mode but has worse horizontal scalability characteristic(~50+ executors). |
| spark.biodatageeks.bam.useGKLInflate | true | Whether to use Intel GKL deflater when using HadoopBAM (for disq it is always on) |
| spark.biodatageeks.bam.validation | SILENT | Method of BAM records validation |
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Last modified February 1, 2023: fix:race condition for local[n] in toCoverage method (#172) (a49c32b)